Gene Regulation: Non-Constitutive Genes And Their Control

how is a non-constitutive gene turned off

The process of turning genes on and off is known as gene regulation, which is an important part of normal development. Genes are turned on and off in different patterns during development to make a brain cell look and act differently from a liver cell or a muscle cell. Gene regulation can occur at any point during gene expression, but most commonly occurs at the level of transcription (when the information in a gene's DNA is passed to mRNA). Constitutive genes are always expressed and tend to be vital for basic cell functions. They are often referred to as housekeeping genes. In contrast, regulated genes are only needed occasionally. These genes are normally off but can be turned on when a substrate is present.

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Gene regulation

At its core, gene regulation involves the interaction between genes and their environment. While some genes, known as constitutive or housekeeping genes, are always "on" and vital for basic cell functions, regulated genes can be inducible or repressible. Inducible genes are typically off but can be activated when specific substrates or environmental signals are present. On the other hand, repressible genes are usually on but can be turned off when the end product is abundant or when certain signals are absent.

The process of gene regulation can be influenced by various factors, including developmental stages, the external environment, internal influences like hormones, and genetic mutations. For example, in prokaryotes, regulatory proteins often act as repressors, binding near the gene to prevent expression until a specific signal or ligand triggers activation. In eukaryotes, the default state is typically "off," and transcription factors play a key role in activating gene expression.

The specific mechanisms of gene regulation are still being actively researched. Recent studies using yeast as a model have provided insights into how transcription factors and cofactors influence gene expression. By removing parts of the yeast transcription machinery, researchers can better understand the complex interplay of factors that control gene expression in humans.

Overall, gene regulation is a dynamic and intricate process that ensures genes are expressed appropriately, allowing cells to respond to their environment and perform their specific functions effectively.

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Transcription factors

In eukaryotes, DNA is organized with the help of histones into compact particles called nucleosomes, which makes the DNA within them inaccessible to many transcription factors. Some transcription factors, called pioneer factors, can still bind to their DNA binding sites on the nucleosomal DNA. For most other transcription factors, the nucleosome needs to be actively unwound by molecular motors or partially unwrapped by thermal fluctuations to allow access to the transcription factor binding site.

In many eukaryotic organisms, the promoter contains a conserved gene sequence called the TATA box, which is recognized by different TF families. Transcription is initiated when one TF binds to one of these promoter sequences, triggering a series of interactions between multiple proteins (activators, regulators, and repressors) at the same site or other promoter sequences. Ultimately, a transcription complex is formed at the promoter, facilitating binding and transcription by RNA polymerase. However, repressor molecules can sometimes bind to silencer elements near a gene and inhibit the binding, assembly, or activity of the transcription complex, thereby turning off gene expression.

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Environmental signals

Genes are regulated through various processes, including transcription. Transcription factors, influenced by environmental signals, can either hide or reveal gene directions, effectively turning genes off or on. Environmental signals induce transcription factors and cofactors to assist in loading the transcription machinery. These transcription factors and cofactors remain "poised and ready" until triggered by the appropriate signals, at which point they become highly active.

In the context of environmental signals, yeast provides an excellent model for understanding gene regulation in humans due to the similarity in their molecular machinery. Research on yeast genes has identified two classes: the first group provides basic housekeeping functions and is always "on" at low levels. The second class, inducible genes, has a group of proteins assembled nearby. When triggered by environmental signals, these inducible genes exhibit high levels of induced transcription, allowing for a rapid response to changing environments.

Gene regulation can also be influenced by epigenetics, which studies how environmental and lifestyle factors can modify gene behaviour without altering the underlying genetic code. Epigenetic modifications can impact the expression of associated genes, demonstrating the intricate interplay between environmental signals and gene regulation.

While the specific mechanisms may vary between prokaryotes and eukaryotes, environmental signals play a fundamental role in gene regulation across different organisms. In prokaryotes, regulatory proteins, influenced by the environment, can bind near their regulatory target genes, impacting their expression. In eukaryotes, activating transcription factors can recruit RNA polymerase to initiate transcription, with binding sites located upstream or downstream of the genes.

In summary, environmental signals are integral to gene regulation, influencing the activity of transcription factors and the expression of genes. This dynamic process allows organisms to adapt to their surroundings and perform essential functions.

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Epigenetics

Epigenetic changes can be influenced by environmental factors, such as smoking, diet, and physical activity, as well as normal development and aging. These changes can affect gene expression by altering the way the body reads a DNA sequence, without actually changing the sequence itself. One common mechanism of epigenetic change is DNA methylation, where a chemical called a methyl group is added to or removed from the DNA, typically turning genes off and on, respectively.

In the context of non-constitutive gene expression, epigenetics can prevent the constitutive expression of certain genes. For example, in plants, convergent epigenetic mechanisms can avoid constitutive expression of immune receptor gene subsets. Mutants carrying abnormal repressive marks, such as 5-methyl cytosine (5-mC) and histone 3 lysine 9 dimethylation (H3K9me2), exhibit basal repression of certain genes. Additionally, epigenetic marks at promoters, but not gene bodies, can explain the activation of certain genes in mutants.

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Gene therapy

Gene regulation is the process by which genes are turned on and off. Gene transcription is a process where a protein called the transcription factor can either hide or reveal gene directions, effectively turning genes off or on. Genes can be turned on and off in different patterns during development, allowing cells to react quickly to changes in their environments. For example, a brain cell looks and acts differently from a liver cell or a muscle cell due to gene regulation.

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Frequently asked questions

Gene regulation is the process of turning genes on and off. It is an important part of normal development. Genes are turned on and off in different patterns during development to make a brain cell look and act different from a liver cell or a muscle cell, for example.

Non-constitutive genes, also known as regulated genes, are only needed occasionally. They are usually off but can be turned on when a substrate is present.

Genes are turned off through processes like transcription, where a protein called the transcription factor can hide gene directions, effectively turning genes off.

Environmental and lifestyle factors can change gene behavior without altering genetic makeup. In prokaryotes, most regulatory proteins are negative and therefore turn genes off.

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